dsBase - v6.1-dev

Made on 2020-10-16 08:24:13

Test type	Number of tests	Number of passes	Time taken (s)
arg	14	14	0
smk	2502	2502	8
Total	2516	2516	8

opal
os	Ubuntu 16.04.7 LTS
R	R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
branch	v6.1-dev

Tests based on DataSHIELD functions

Function name ↑↓	Coverage ↑↓	Test file links		Pass rate		Test run time (s)
Function name ↑↓	Coverage ↑↓	arg ↑↓	smk ↑↓	arg ↑↓	smk ↑↓	arg ↑↓	smk ↑↓
BooleDS	74.4		link		126/126		0.3setup: 0 ---------- simple equal: 0.141 ---------- simple not-equal: 0.026 ---------- simple less-than: 0.024 ---------- simple less-than-equal: 0.024 ---------- simple greater-than: 0.022 ---------- simple greater-than-equal: 0.024 ---------- na-check numeric: 0.037 ---------- na-check logical: 0.037 ---------- shutdown: 0 ---------- done: 0
absDS	100.0		link		52/52		0.1setup: 0 ---------- special: 0.026 ---------- numeric: 0.015 ---------- integer: 0.014 ---------- special vector: 0.01 ---------- numeric vector: 0.013 ---------- integer vector: 0.013 ---------- shutdown: 0 ---------- done: 0
asCharacterDS	66.7		link		23/23		0.0setup: 0 ---------- numeric: 0.013 ---------- numeric vector: 0.013 ---------- logical: 0.011 ---------- logical vector: 0.011 ---------- shutdown: 0 ---------- done: 0
asDataMatrixDS	66.7		link		17/17		0.0setup: 0 ---------- simple: 0.035 ---------- shutdown: 0 ---------- done: 0
asFactorDS1	66.7		link		5/5		0.0setup: 0 ---------- simple: 0.018 ---------- shutdown: 0 ---------- done: 0
asFactorDS2	100.0		link		47/47		0.1setup: 0 ---------- simple: 0.104 ---------- shutdown: 0 ---------- done: 0
asIntegerDS	66.7		link		20/20		0.0setup: 0 ---------- numeric: 0.017 ---------- numeric vector: 0.013 ---------- character: 0.007 ---------- character vector: 0.012 ---------- shutdown: 0 ---------- done: 0
asListDS	81.8		link		8/8		0.0setup: 0 ---------- simple: 0.022 ---------- shutdown: 0 ---------- done: 0
asLogicalDS	100.0	link	link	12/12	52/52	0.1setup: 0 ---------- direct input numeric: 0.085 ---------- input NULL: 0.014 ---------- input NA: 0.008 ---------- shutdown: 0 ---------- done: 0	0.1setup: 0 ---------- integer: 0.021 ---------- integer vector: 0.011 ---------- numeric: 0.012 ---------- numeric vector: 0.011 ---------- character: 0.041 ---------- shutdown: 0 ---------- done: 0
asMatrixDS	66.7		link		17/17		0.0setup: 0 ---------- simple: 0.039 ---------- shutdown: 0 ---------- done: 0
asNumericDS	66.7		link		10/10		0.0setup: 0 ---------- character: 0.017 ---------- character vector: 0.012 ---------- shutdown: 0 ---------- done: 0
boxPlotGGDS	0.0
boxPlotGG_data_TreatmentDS	0.0
boxPlotGG_data_Treatment_numericDS	0.0
cDS	62.5		link		12/12		0.1setup: 0 ---------- numeric: 0.024 ---------- character: 0.043 ---------- shutdown: 0 ---------- done: 0
cbindDS	76.5		link		8/8		0.0setup: 0 ---------- simple: 0.026 ---------- shutdown: 0 ---------- done: 0
changeRefGroupDS	100.0		link		28/28		0.1setup: 0 ---------- Main: 0.06 ---------- shutdown: 0 ---------- done: 0
checkNegValueDS	100.0		link		12/12		0.0setup: 0 ---------- with no neg: 0.022 ---------- with neg: 0.011 ---------- shutdown: 0 ---------- done: 0
classDS	100.0		link		56/56		0.2setup: 0 ---------- character: 0.024 ---------- integer: 0.011 ---------- numeric: 0.011 ---------- logical: 0.015 ---------- data.frame: 0.009 ---------- array: 0.008 ---------- matrix: 0.015 ---------- data.matrix: 0.017 ---------- date: 0.008 ---------- formula: 0.008 ---------- environment: 0.009 ---------- NA: 0.008 ---------- NULL: 0.008 ---------- shutdown: 0 ---------- done: 0
colnamesDS	100.0		link		8/8		0.0setup: 0 ---------- data.frame: 0.023 ---------- data.matrix: 0.01 ---------- shutdown: 0 ---------- done: 0
completeCasesDS	82.9		link		79/79		0.2setup: 0 ---------- vector: 0.086 ---------- data.frame: 0.048 ---------- matrix: 0.022 ---------- data.matrix: 0.048 ---------- shutdown: 0 ---------- done: 0
corDS	64.2		link		360/360		1.2setup: 0 ---------- pairwise without na: 0.685 ---------- pairwise with na: 0.098 ---------- casewise without na: 0.316 ---------- casewise with na: 0.076 ---------- shutdown: 0 ---------- done: 0
corTestDS	100.0		link		116/116		0.3setup: 0 ---------- without na: 0.207 ---------- with na: 0.044 ---------- shutdown: 0 ---------- done: 0
covDS	59.6		link		87/87		0.4setup: 0 ---------- casewise.complete: 0.085 ---------- pairwise.complete: 0.32 ---------- shutdown: 0 ---------- done: 0
dataFrameDS	63.0		link		9/9		0.0setup: 0 ---------- Main: 0.031 ---------- shutdown: 0 ---------- done: 0
dataFrameFillDS	88.0	link	link	2/2	80/80	0.0setup: 0 ---------- Main: 0.025 ---------- shutdown: 0 ---------- done: 0	0.2setup: 0 ---------- Main: 0.202 ---------- shutdown: 0 ---------- done: 0
dataFrameSortDS	75.0		link		276/276		0.9setup: 0 ---------- numeric input: 0.597 ---------- string input: 0.333 ---------- shutdown: 0 ---------- done: 0
dataFrameSubsetDS1	0.0
dataFrameSubsetDS2	0.0
densityGridDS	0.0
dimDS	100.0		link		8/8		0.0setup: 0 ---------- numeric: 0.025 ---------- character: 0.01 ---------- shutdown: 0 ---------- done: 0
extract	100.0		link		48/48		0.1setup: 0 ---------- simple: 0.062 ---------- simple vector: 0.06 ---------- shutdown: 0 ---------- done: 0
getWGSRDS	80.0		link		60/60		0.4setup: 0 ---------- simple: 0.382 ---------- shutdown: 0 ---------- done: 0
glmDS1	0.0
glmDS2	0.0
glmPredictDS.ag	0.0
glmPredictDS.as	0.0
glmSLMADS.assign	0.0
glmSLMADS1	0.0
glmSLMADS2	0.0
glmSummaryDS.ag	0.0
glmSummaryDS.as	0.0
glmerSLMADS2	0.0
global
heatmapPlotDS	0.0
histogramDS1	0.0
histogramDS2	0.0
isNaDS	100.0		link		18/18		0.0setup: 0 ---------- numeric vector: 0.033 ---------- character vector: 0.016 ---------- shutdown: 0 ---------- done: 0
isValidDS	64.7		link		54/54		0.2setup: 0 ---------- character: 0.028 ---------- integer: 0.013 ---------- numeric: 0.013 ---------- logical: 0.023 ---------- data.frame: 0.009 ---------- array: 0.008 ---------- matrix: 0.009 ---------- data.matrix: 0.009 ---------- date: 0.01 ---------- formula: 0.009 ---------- environment: 0.008 ---------- NA: 0.009 ---------- NULL: 0.01 ---------- shutdown: 0 ---------- done: 0
kurtosisDS1	89.5		link		24/24		0.1setup: 0 ---------- method 1: 0.034 ---------- method 2: 0.053 ---------- method 3: 0.016 ---------- shutdown: 0 ---------- done: 0
kurtosisDS2	76.9		link		10/10		0.0setup: 0 ---------- Main: 0.033 ---------- shutdown: 0 ---------- done: 0
lengthDS	100.0		link		8/8		0.0setup: 0 ---------- data.frame: 0.027 ---------- vector: 0.016 ---------- shutdown: 0 ---------- done: 0
levelsDS	81.8		link		10/10		0.0setup: 0 ---------- numeric vector: 0.036 ---------- shutdown: 0 ---------- done: 0
lexisDS1	0.0
lexisDS2	0.0
lexisDS3	0.0
listDS	100.0		link		8/8		0.0setup: 0 ---------- simple: 0.032 ---------- shutdown: 0 ---------- done: 0
listDisclosureSettingsDS	100.0		link		30/30		0.1setup: 0 ---------- Main: 0.066 ---------- shutdown: 0 ---------- done: 0
lmerSLMADS2	0.0
lsDS	82.9		link		12/12		0.1setup: 0 ---------- simple: 0.027 ---------- simple: 0.067 ---------- shutdown: 0 ---------- done: 0
matrixDS	0.0
matrixDetDS1	0.0
matrixDetDS2	0.0
matrixDiagDS	0.0
matrixDimnamesDS	0.0
matrixInvertDS	0.0
matrixMultDS	0.0
matrixTransposeDS	0.0
meanDS	83.3		link		24/24		0.1setup: 0 ---------- numeric: 0.047 ---------- numeric with NA: 0.035 ---------- shutdown: 0 ---------- done: 0
meanSdGpDS	0.0
mergeDS	0.0
messageDS	100.0		link		19/19		0.1setup: 0 ---------- Main: 0.093 ---------- shutdown: 0 ---------- done: 0
namesDS	70.6		link		8/8		0.1setup: 0 ---------- list of atoms: 0.028 ---------- list of vectors: 0.032 ---------- shutdown: 0 ---------- done: 0
numNaDS	100.0		link		6/6		0.0setup: 0 ---------- simple: 0.03 ---------- shutdown: 0 ---------- done: 0
quantileMeanDS	87.5		link		40/40		0.1setup: 0 ---------- Main: 0.058 ---------- with NA: 0.045 ---------- shutdown: 0 ---------- done: 0
rBinomDS	100.0		link		20/20		0.1setup: 0 ---------- simple: 0.055 ---------- shutdown: 0 ---------- done: 0
rNormDS	100.0		link		20/20		0.1setup: 0 ---------- simple: 0.073 ---------- shutdown: 0 ---------- done: 0
rPoisDS	100.0		link		20/20		0.1setup: 0 ---------- simple: 0.055 ---------- shutdown: 0 ---------- done: 0
rUnifDS	100.0		link		20/20		0.1setup: 0 ---------- simple: 0.071 ---------- shutdown: 0 ---------- done: 0
rangeDS	81.8		link		8/8		0.0setup: 0 ---------- without NAs: 0.033 ---------- with NAs: 0.011 ---------- shutdown: 0 ---------- done: 0
rbindDS	100.0		link		15/15		0.0setup: 0 ---------- simple: 0.048 ---------- shutdown: 0 ---------- done: 0
reShapeDS	0.0
recodeLevelsDS	80.0		link		8/8		0.0setup: 0.034 ---------- shutdown: 0 ---------- done: 0
recodeValuesDS1	67.3		link		3/3		0.0setup: 0.031 ---------- shutdown: 0 ---------- done: 0
recodeValuesDS2	79.0		link		16/16		0.1setup: 0 ---------- numeric: 0.039 ---------- character: 0.093 ---------- shutdown: 0 ---------- done: 0
repDS	0.0
replaceNaDS	83.3		link		10/10		0.0setup: 0 ---------- Main: 0.041 ---------- shutdown: 0 ---------- done: 0
rmDS	60.9		link		6/6		0.0setup: 0 ---------- simple: 0.035 ---------- shutdown: 0 ---------- done: 0
rowColCalcDS	78.6		link		24/24		0.1setup: 0 ---------- Main: 0.086 ---------- shutdown: 0 ---------- done: 0
sampleDS	65.8		link		11/11		0.1setup: 0 ---------- simple: 0.052 ---------- shutdown: 0 ---------- done: 0
scatterPlotDS	0.0
seqDS	58.0		link		41/41		0.2setup: 0 ---------- Main: 0.164 ---------- shutdown: 0 ---------- done: 0
setFilterDS	100.0		link		6/6		0.0setup: 0 ---------- simple: 0.036 ---------- shutdown: 0 ---------- done: 0
setSeedDS	100.0		link		3/3		0.0setup: 0 ---------- simple: 0.043 ---------- shutdown: 0 ---------- done: 0
skewnessDS1	89.5		link		24/24		0.1setup: 0 ---------- method 1: 0.039 ---------- method 2: 0.051 ---------- method 3: 0.018 ---------- shutdown: 0 ---------- done: 0
skewnessDS2	76.9		link		10/10		0.0setup: 0 ---------- Main: 0.042 ---------- shutdown: 0 ---------- done: 0
sqrtDS	100.0		link		57/57		0.2setup: 0 ---------- special: 0.05 ---------- numeric: 0.022 ---------- integer: 0.021 ---------- special vector: 0.021 ---------- numeric vector: 0.024 ---------- integer vector: 0.019 ---------- shutdown: 0 ---------- done: 0
subsetByClassDS	95.5		link		24/24		0.1setup: 0 ---------- Main: 0.07 ---------- shutdown: 0 ---------- done: 0
subsetByClassHelper1	61.9
subsetByClassHelper2	67.7
subsetByClassHelper3	63.3
subsetDS	38.5		link		50/50		0.2setup: 0 ---------- Main: 0.206 ---------- shutdown: 0 ---------- done: 0
table1DDS	0.0
table2DDS	0.0
tableDS	0.0
tableDS.assign	0.0
tableDS2	0.0
tapplyDS	59.4		link		78/78		0.4setup: 0.417 ---------- shutdown: 0 ---------- done: 0
tapplyDS.assign	27.1		link		9/9		0.0setup: 0 ---------- simple: 0.045 ---------- shutdown: 0 ---------- done: 0
testObjExistsDS	100.0		link		80/80		0.2setup: 0 ---------- character: 0.054 ---------- integer: 0.019 ---------- numeric: 0.019 ---------- logical: 0.025 ---------- data.frame: 0.013 ---------- array: 0.013 ---------- matrix: 0.015 ---------- data.matrix: 0.016 ---------- date: 0.012 ---------- formula: 0.012 ---------- environment: 0.013 ---------- NA: 0.012 ---------- NULL: 0.013 ---------- not exists: 0.013 ---------- shutdown: 0 ---------- done: 0
unListDS	66.7		link		16/16		0.1setup: 0 ---------- simple: 0.066 ---------- shutdown: 0 ---------- done: 0
varDS	78.6		link		28/28		0.1setup: 0 ---------- numeric: 0.056 ---------- numeric with NA: 0.048 ---------- shutdown: 0 ---------- done: 0

Tests based on the environment

Function name ↑↓	Test file links	Pass rate	Test run time (s)